Large dimeric ligands with favorable pharmacokinetic properties and peroxisome proliferator-activated receptor agonist activity in vitro and in vivo

J Med Chem. 2003 Nov 6;46(23):4883-94. doi: 10.1021/jm0309046.

Abstract

Two potent nonselective, but PPARalpha-preferring, PPAR agonists 5 and 6 were designed and synthesized in high yields. The concept of dimeric ligands in transcription factors was investigated by synthesizing and testing the corresponding dimers 7, 8a, and 8b in PPAR transactivation assays. The three dimeric ligands all showed agonist activity on all three PPAR receptor subtypes, but with different profiles compared to the monomers 5 and 6. Despite breaking all the "rule of five" criteria, the dimers had excellent oral bioavailability and pharmacokinetic properties, resulting in good in vivo efficacy in db/db mice. X-ray crystal structure and modeling experiments suggested that the dimers interacted with the AF-2 helix as well as with amino acid residues in the lipophilic pocket close to the receptor surface.

MeSH terms

  • Alkenes / chemical synthesis*
  • Alkenes / pharmacokinetics
  • Alkenes / pharmacology
  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Biological Availability
  • Cell Line
  • Crystallography, X-Ray
  • Dimerization
  • Humans
  • Ligands
  • Male
  • Mice
  • Models, Molecular
  • Molecular Sequence Data
  • Propionates / chemical synthesis*
  • Propionates / pharmacokinetics
  • Propionates / pharmacology
  • Rats
  • Receptors, Cytoplasmic and Nuclear / agonists*
  • Receptors, Cytoplasmic and Nuclear / chemistry
  • Receptors, Cytoplasmic and Nuclear / metabolism
  • Sequence Alignment
  • Stereoisomerism
  • Transcription Factors / agonists*
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism
  • Transcriptional Activation

Substances

  • Alkenes
  • Ligands
  • Propionates
  • Receptors, Cytoplasmic and Nuclear
  • Transcription Factors